eu_get_replicate_numbers
Given an input file with replicate IDs, one per line, retrieves the attributes
biological_replicate_number and technical_replicate_number. An output file is created in
tab-delimited format with these two additional columns appended to the original lines.
usage: eu_get_replicate_numbers.py [-h] [-m DCC_MODE] -i INFILE -o OUTFILE
Named Arguments
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-m, --dcc-mode |
The ENCODE Portal site (‘prod’ or ‘dev’, or an explicit host name, i.e. ‘demo.encodedcc.org’) to connect to.
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-i, --infile |
Input file containing replicate identifiers (one per line), i.e. alias, UUID, or @id.
Empty lines and lines starting with ‘#’ will be skipped.
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-o, --outfile |
The tab-delimited output file, which is the same as the input file except for the addition of
the additional columns ‘biological_replicate_number’ and ‘technical_replicate_number’
(header-line not present).
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