eu_report_fastq_content_errors¶
Finds FASTQ files with a content error and indicates the error.
Given an input file containing experiment identifiers, one per row, looks up all FASTQ files on the experiment to check for content errors. If any FASTQ file object has a status property of “content_error”, then the content error message will be extracted from the property content_error_detail. A new file will be output containing the error details.
usage: report_fastq_content_errors.py [-h] [-m DCC_MODE] -i INFILE -o OUTFILE
Named Arguments¶
-m, --dcc-mode |
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-i, --infile |
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-o, --outfile |
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